You can use conditional output include options in the command line. These options control what is included in your published output on the basis of the selected output format or user-defined include option conditions. Setting them is equivalent to setting the include options in the Publish dialog when you publish manually.
Specifying include options is optional. If you don't specify this switch Help+Manual will use the default include options, which are the options you used the last time you published to the current output format manually.
See the Syntax reference for details on all the available switches and parameters.
Note that include options do not select the output format! Include options only control what is included in or excluded from your project, not the output format of your project.